Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_3543Transcriptional regulator, Crp/Fnr family. (236 aa)    
Predicted Functional Partners:
Rfer_3511
Transcriptional regulator, Crp/Fnr family.
  
  
  0.933
Rfer_3326
Transcriptional regulator, Crp/Fnr family.
  
  
0.923
Rfer_2394
Transcriptional regulator, Crp/Fnr family.
  
  
0.920
Rfer_3025
Cyclic nucleotide-binding domain (cNMP-BD) protein.
     
 0.902
Rfer_3544
RNA-binding S4.
       0.719
Rfer_3542
AMP-dependent synthetase and ligase.
 
  
 0.635
Rfer_3538
Conserved hypothetical protein.
 
    0.588
Rfer_3072
Endonuclease.
    
 0.586
Rfer_2284
Putative adenylate/guanylate cyclase.
  
 0.559
Rfer_3540
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.554
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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