STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3546Putative PAS/PAC sensor protein. (282 aa)    
Predicted Functional Partners:
Rfer_1768
Multi-sensor hybrid histidine kinase.
 
0.944
Rfer_3548
PAS/PAC sensor hybrid histidine kinase.
 
0.917
Rfer_0055
Metal dependent phosphohydrolase.
 
 
 0.891
Rfer_2293
Metal dependent phosphohydrolase.
 
      0.875
Rfer_2356
PAS/PAC sensor hybrid histidine kinase.
 
0.817
Rfer_3638
Metal dependent phosphohydrolase.
 
      0.797
Rfer_2271
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.742
Rfer_3549
Transcriptional regulator, Crp/Fnr family.
 
 
 0.710
Rfer_2038
Periplasmic sensor hybrid histidine kinase.
 
 0.700
Rfer_3821
Periplasmic sensor signal transduction histidine kinase.
 
 
 0.691
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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