Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3553Branched-chain alpha-keto acid dehydrogenase E1 component. (345 aa)    
Predicted Functional Partners:
Rfer_2214
Dihydrolipoamide dehydrogenase.
 
 0.999
Rfer_3554
Branched-chain alpha-keto acid dehydrogenase E1 component.
 0.999
Rfer_3552
Branched-chain alpha-keto acid dehydrogenase E2 component.
 
 0.998
pdhA
Pyruvate dehydrogenase (lipoamide); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 0.995
Rfer_3965
Pyruvate dehydrogenase (lipoamide).
 0.995
Rfer_2505
Twin-arginine translocation pathway signal.
 0.987
Rfer_2319
Dihydrolipoamide dehydrogenase.
 
 0.985
Rfer_0181
Pyridine nucleotide-disulphide oxidoreductase dimerisation protein.
 
 0.982
Rfer_0385
Catalytic domain of components of various dehydrogenase complexes.
 
 0.940
ilvE
Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.921
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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