STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3554Branched-chain alpha-keto acid dehydrogenase E1 component. (411 aa)    
Predicted Functional Partners:
Rfer_3553
Branched-chain alpha-keto acid dehydrogenase E1 component.
 0.999
Rfer_2214
Dihydrolipoamide dehydrogenase.
 
 0.998
Rfer_3552
Branched-chain alpha-keto acid dehydrogenase E2 component.
 
 0.998
Rfer_0386
Transketolase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
 0.993
Rfer_3966
Transketolase.
 0.993
Rfer_2504
Transketolase-like.
 0.971
Rfer_2319
Dihydrolipoamide dehydrogenase.
 
 
 0.970
Rfer_0181
Pyridine nucleotide-disulphide oxidoreductase dimerisation protein.
  
 
 0.965
ilvE
Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.911
Rfer_0461
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
  
 
 0.908
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.