STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgT2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family. (324 aa)    
Predicted Functional Partners:
Rfer_3566
Conserved hypothetical protein.
 
   
 0.951
Rfer_3565
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.920
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
 
     0.604
Rfer_0950
2-keto-3-deoxy-phosphogalactonate aldolase.
 
  
 0.570
Rfer_3564
Transcriptional regulator, DeoR family.
       0.544
Rfer_2061
2-keto-3-deoxy-phosphogluconate aldolase.
  
  
 0.536
Rfer_0938
2-keto-3-deoxy-phosphogalactonate aldolase.
  
  
 0.511
Rfer_0961
2-keto-3-deoxy-phosphogalactonate aldolase.
  
  
 0.511
Rfer_0445
Type III effector Hrp-dependent outers.
 
   
 0.415
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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