Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3574Periplasmic sensor signal transduction histidine kinase. (342 aa)    
Predicted Functional Partners:
Rfer_3573
Response regulator receiver domain protein.
 
 
 
 0.910
Rfer_2356
PAS/PAC sensor hybrid histidine kinase.
 
 0.825
Rfer_2737
Response regulator receiver domain protein.
 
 
 0.804
Rfer_2738
Response regulator receiver domain protein.
 
 
 0.804
Rfer_2735
Response regulator receiver domain protein.
 
 
 0.803
Rfer_3778
Response regulator receiver domain protein.
 
 
 0.780
Rfer_3397
Two component transcriptional regulator, LuxR family.
 
 
 0.750
Rfer_2741
Two component, sigma54 specific, transcriptional regulator, Fis family.
 
 
 0.747
Rfer_1768
Multi-sensor hybrid histidine kinase.
 
 
0.739
Rfer_1372
Response regulator receiver domain protein.
 
 
 
 0.735
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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