Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3576Anaerobic c4-dicarboxylate membrane transporter family protein; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family. (446 aa)    
Predicted Functional Partners:
Rfer_3575
Peptidase M14, carboxypeptidase A.
       0.661
Rfer_0093
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase.
      
 0.618
Rfer_3577
DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.
       0.528
Rfer_2583
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.474
Rfer_3846
Fumarate lyase.
 
  
 0.464
Rfer_4079
Hypothetical protein.
  
  
 0.456
Rfer_1713
Hypothetical protein.
  
  
 0.451
Rfer_4080
Hypothetical protein.
  
  
 0.446
Rfer_3574
Periplasmic sensor signal transduction histidine kinase.
     
 0.417
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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