node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rfer_1345 | Rfer_1388 | Rfer_1345 | Rfer_1388 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | GTP-binding; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.839 |
Rfer_1345 | Rfer_2106 | Rfer_1345 | Rfer_2106 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent helicase HrpA. | 0.840 |
Rfer_1345 | Rfer_3577 | Rfer_1345 | Rfer_3577 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | 0.717 |
Rfer_1345 | Rfer_3931 | Rfer_1345 | Rfer_3931 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | SNF2-related. | 0.442 |
Rfer_1345 | rplC | Rfer_1345 | Rfer_3795 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.696 |
Rfer_1345 | rplD | Rfer_1345 | Rfer_3794 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.490 |
Rfer_1345 | rplM | Rfer_1345 | Rfer_0721 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.695 |
Rfer_1345 | rpsD | Rfer_1345 | Rfer_4218 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.447 |
Rfer_1388 | Rfer_1345 | Rfer_1388 | Rfer_1345 | GTP-binding; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.839 |
Rfer_1388 | Rfer_3577 | Rfer_1388 | Rfer_3577 | GTP-binding; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | 0.800 |
Rfer_1388 | pnp | Rfer_1388 | Rfer_1489 | GTP-binding; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.481 |
Rfer_1388 | rplC | Rfer_1388 | Rfer_3795 | GTP-binding; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.879 |
Rfer_1388 | rplD | Rfer_1388 | Rfer_3794 | GTP-binding; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.854 |
Rfer_1388 | rplM | Rfer_1388 | Rfer_0721 | GTP-binding; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.855 |
Rfer_2106 | Rfer_1345 | Rfer_2106 | Rfer_1345 | ATP-dependent helicase HrpA. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.840 |
Rfer_2106 | Rfer_3577 | Rfer_2106 | Rfer_3577 | ATP-dependent helicase HrpA. | DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | 0.750 |
Rfer_2106 | Rfer_3931 | Rfer_2106 | Rfer_3931 | ATP-dependent helicase HrpA. | SNF2-related. | 0.444 |
Rfer_2106 | rplD | Rfer_2106 | Rfer_3794 | ATP-dependent helicase HrpA. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.721 |
Rfer_2106 | rpsD | Rfer_2106 | Rfer_4218 | ATP-dependent helicase HrpA. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.937 |
Rfer_3577 | Rfer_1345 | Rfer_3577 | Rfer_1345 | DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.717 |