Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3580Beta-lactamase-like. (308 aa)    
Predicted Functional Partners:
Rfer_3699
GCN5-related N-acetyltransferase.
 
     0.616
Rfer_3579
DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.
   
 
 0.609
Rfer_0095
Conserved hypothetical protein.
  
     0.601
Rfer_3535
Conserved hypothetical protein.
  
     0.560
Rfer_0611
Hypothetical protein.
  
     0.548
Rfer_0885
BFD-like (2Fe-2S)-binding protein.
  
 0.546
Rfer_3122
Phasin.
  
     0.543
Rfer_2940
Sulfate transporter/antisigma-factor antagonist STAS.
  
     0.526
Rfer_1322
Putative membrane protein.
  
    0.519
Rfer_2140
Phasin.
  
     0.510
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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