STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3584Transcriptional regulator, GntR family. (275 aa)    
Predicted Functional Partners:
Rfer_2806
Transcriptional regulator, GntR family.
 
  
 0.782
Rfer_0874
Transcriptional regulator, GntR family.
 
  
 0.637
Rfer_1033
Transcriptional regulator, GntR family.
 
  
 0.597
Rfer_2278
Transcriptional regulator, MerR family.
 
  
 0.570
Rfer_4186
Transcriptional regulator, GntR family.
  
  
 0.562
Rfer_3585
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.513
Rfer_3586
Short-chain dehydrogenase/reductase SDR.
  
  
 0.427
Rfer_0013
Transcriptional regulator, GntR family.
  
  
 0.409
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.