STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3585Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (477 aa)    
Predicted Functional Partners:
Rfer_0388
AMP-dependent synthetase and ligase.
  
 0.939
Rfer_2581
Acetyl-coenzyme A synthetase.
  
 0.939
Rfer_2698
AMP-dependent synthetase and ligase.
  
 0.939
Rfer_0592
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.937
Rfer_2865
Iron-containing alcohol dehydrogenase.
 
 0.929
Rfer_0121
Alcohol dehydrogenase, zinc-binding; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 
 0.925
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 
 0.924
Rfer_0372
Methylmalonate-semialdehyde dehydrogenase (acylating).
  
  
 
0.923
Rfer_2754
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase.
  
 0.923
Rfer_0597
Agmatinase; Belongs to the arginase family.
  
 0.922
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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