STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3587Response regulator receiver domain protein. (225 aa)    
Predicted Functional Partners:
Rfer_3588
Multi-sensor signal transduction histidine kinase.
 
 
 0.973
Rfer_3589
Putative proline rich signal peptide protein.
 
     0.933
Rfer_3590
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.835
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
    
 0.741
priB
Putative primosomal replication protein; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.681
Rfer_2355
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor.
  
 
 0.643
Rfer_3950
Two component transcriptional regulator, winged helix family.
  
 
 0.633
Rfer_3574
Periplasmic sensor signal transduction histidine kinase.
 
 
 0.631
Rfer_2211
Multi-sensor signal transduction histidine kinase.
 
 
 
 0.622
Rfer_2981
Signal transduction histidine kinase, nitrogen specific, NtrB.
 
 
 0.614
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.