Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3588Multi-sensor signal transduction histidine kinase. (775 aa)    
Predicted Functional Partners:
Rfer_3587
Response regulator receiver domain protein.
 
 0.997
Rfer_3589
Putative proline rich signal peptide protein.
 
     0.948
Rfer_3590
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
   
 0.870
Rfer_2901
Putative inner membrane transmembrane protein.
  
     0.643
rpoC
DNA-directed RNA polymerase, subunit beta-prime; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.611
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
 
 0.593
Rfer_3819
Outer membrane chaperone Skp (OmpH); Belongs to the skp family.
  
     0.593
Rfer_1997
Outer membrane chaperone Skp (OmpH); Belongs to the skp family.
  
     0.588
Rfer_2096
NlpBDapX lipoprotein.
  
     0.588
Rfer_0550
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.582
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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