STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3589Putative proline rich signal peptide protein. (203 aa)    
Predicted Functional Partners:
Rfer_3588
Multi-sensor signal transduction histidine kinase.
 
    0.953
Rfer_3587
Response regulator receiver domain protein.
 
     0.933
Rfer_3590
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.856
Rfer_3411
Ribonuclease II.
  
     0.742
Rfer_1718
Uncharacterized enzyme of heme biosynthesis-like.
  
     0.738
Rfer_2901
Putative inner membrane transmembrane protein.
  
     0.734
Rfer_2878
Rieske (2Fe-2S) protein.
  
     0.731
Rfer_2096
NlpBDapX lipoprotein.
  
     0.725
Rfer_4235
Protein of unknown function DUF1239.
  
     0.692
lptA
OstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.690
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.