STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3608Putative lipoprotein transmembrane. (194 aa)    
Predicted Functional Partners:
Rfer_3609
Methyl-accepting chemotaxis sensory transducer.
       0.548
Rfer_1742
Putative transmembrane protein.
  
    0.537
Rfer_3437
Hypothetical protein.
  
  
 0.529
Rfer_2207
Hypothetical protein.
  
     0.497
Rfer_1373
CheW-like protein.
  
     0.491
Rfer_1610
Putative uncharacterized conserved protein.
 
  
 0.485
Rfer_1375
CheA signal transduction histidine kinases.
  
     0.481
Rfer_1619
Protein of unknown function DUF323.
 
  
 0.466
Rfer_3940
FHA domain containing protein.
  
    0.446
Rfer_2289
Putative transmembrane protein.
  
     0.425
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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