Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_3728Protein of unknown function DUF6, transmembrane. (315 aa)    
Predicted Functional Partners:
Rfer_3730
Glutathione S-transferase-like.
       0.844
Rfer_3731
Phenazine biosynthesis PhzC/PhzF protein.
 
     0.813
Rfer_3729
Aminotransferase, class I and II.
     
 0.808
Rfer_3727
Aspartate racemase.
       0.791
Rfer_3726
Conserved hypothetical protein.
     
 0.782
Rfer_3725
Transcriptional regulator, GntR family.
 
   
 0.724
Rfer_0591
Transcriptional regulator, GntR family.
 
   
 0.556
Rfer_3732
Phosphoglycerate mutase.
       0.525
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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