Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3775AMP-dependent synthetase and ligase. (564 aa)    
Predicted Functional Partners:
Rfer_0868
Carbamoyl-phosphate synthase L chain, ATP-binding.
  
 
 0.824
Rfer_3358
Triacylglycerol lipase.
     
 0.803
Rfer_3284
AMP-dependent synthetase and ligase.
  
  
 
0.690
Rfer_3898
AMP-dependent synthetase and ligase.
  
  
 
0.689
Rfer_0321
AMP-dependent synthetase and ligase.
  
  
 
0.682
Rfer_2479
AMP-dependent synthetase and ligase.
 
 
0.675
Rfer_3503
AMP-dependent synthetase and ligase.
  
 
0.649
Rfer_3542
AMP-dependent synthetase and ligase.
  
 
0.649
Rfer_4067
AMP-dependent synthetase and ligase.
  
 
0.649
Rfer_0545
AMP-dependent synthetase and ligase.
  
  
 
0.622
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.