Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rfer_1379 | Rfer_1381 | Rfer_1379 | Rfer_1381 | Phosphoribosyltransferase. | Dihydroorotase. | 0.997 |
Rfer_1379 | carA | Rfer_1379 | Rfer_2004 | Phosphoribosyltransferase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.846 |
Rfer_1379 | carB | Rfer_1379 | Rfer_2006 | Phosphoribosyltransferase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.929 |
Rfer_1379 | pyrB | Rfer_1379 | Rfer_1380 | Phosphoribosyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
Rfer_1379 | pyrD | Rfer_1379 | Rfer_2205 | Phosphoribosyltransferase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.753 |
Rfer_1379 | pyrE | Rfer_1379 | Rfer_3928 | Phosphoribosyltransferase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.900 |
Rfer_1379 | pyrF | Rfer_1379 | Rfer_3776 | Phosphoribosyltransferase. | Orotidine 5'-phosphate decarboxylase subfamily 2; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.988 |
Rfer_1379 | pyrH | Rfer_1379 | Rfer_1991 | Phosphoribosyltransferase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.948 |
Rfer_1379 | surE | Rfer_1379 | Rfer_2782 | Phosphoribosyltransferase. | 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.922 |
Rfer_1379 | upp | Rfer_1379 | Rfer_2073 | Phosphoribosyltransferase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.934 |
Rfer_1381 | Rfer_1379 | Rfer_1381 | Rfer_1379 | Dihydroorotase. | Phosphoribosyltransferase. | 0.997 |
Rfer_1381 | carA | Rfer_1381 | Rfer_2004 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.994 |
Rfer_1381 | carB | Rfer_1381 | Rfer_2006 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.986 |
Rfer_1381 | pyrB | Rfer_1381 | Rfer_1380 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
Rfer_1381 | pyrD | Rfer_1381 | Rfer_2205 | Dihydroorotase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.993 |
Rfer_1381 | pyrE | Rfer_1381 | Rfer_3928 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.927 |
Rfer_1381 | pyrF | Rfer_1381 | Rfer_3776 | Dihydroorotase. | Orotidine 5'-phosphate decarboxylase subfamily 2; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.927 |
carA | Rfer_1379 | Rfer_2004 | Rfer_1379 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Phosphoribosyltransferase. | 0.846 |
carA | Rfer_1381 | Rfer_2004 | Rfer_1381 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotase. | 0.994 |
carA | carB | Rfer_2004 | Rfer_2006 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.999 |
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