Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3822Peptidase S1C, Do; Belongs to the peptidase S1C family. (501 aa)    
Predicted Functional Partners:
Rfer_1739
Peptidase S1C, Do; Belongs to the peptidase S1C family.
  
  
 
0.910
Rfer_1737
Anti sigma-E protein, RseA, Burkholderiaceae specific.
  
 
 0.748
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.721
Rfer_3821
Periplasmic sensor signal transduction histidine kinase.
 
  
 0.704
Rfer_1199
Hypothetical protein.
   
 0.628
Rfer_3820
Two component transcriptional regulator, winged helix family.
  
  
 0.610
Rfer_2259
Ankyrin.
   
 0.600
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.493
Rfer_3507
Short-chain dehydrogenase/reductase SDR.
 
 
 0.487
Rfer_3819
Outer membrane chaperone Skp (OmpH); Belongs to the skp family.
     
 0.486
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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