Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3837Protein of unknown function DUF1555. (453 aa)    
Predicted Functional Partners:
Rfer_1530
Hypothetical protein.
 
 
 0.591
Rfer_3178
DNA translocase FtsK.
   
 
 0.495
Rfer_2478
Thiamine pyrophosphate enzyme-like TPP binding protein; Belongs to the TPP enzyme family.
  
     0.487
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 
 0.471
Rfer_2625
TonB-dependent receptor.
    
 
 0.454
Rfer_0680
Heparinase II/III-like.
    
 
 0.446
Rfer_1308
Carboxyl-terminal protease; Belongs to the peptidase S41A family.
  
 
 0.420
Rfer_3836
Rhodanese-like.
       0.402
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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