STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3979Phosphoesterase, PA-phosphatase related. (222 aa)    
Predicted Functional Partners:
Rfer_3981
Transmembrane protein.
 
     0.888
Rfer_3982
Putative transmembrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.862
Rfer_3991
Conserved hypothetical protein.
 
     0.838
Rfer_3980
Hypothetical protein.
 
 
 0.827
Rfer_3990
Conserved hypothetical protein.
 
     0.813
Rfer_3993
Conserved hypothetical protein.
 
  
 0.802
Rfer_3986
Conserved hypothetical protein.
 
     0.801
Rfer_3978
Acyl carrier protein.
 
 
 0.795
Rfer_3983
Polysaccharide deacetylase.
 
     0.792
Rfer_3985
Conserved hypothetical protein.
 
  
 0.776
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.