STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4010Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1067 aa)    
Predicted Functional Partners:
Rfer_4006
N-6 DNA methylase.
 
 
 0.976
Rfer_4007
Restriction endonuclease S subunits-like.
 
  
 0.964
Rfer_0032
N-6 DNA methylase.
 
 
 0.931
Rfer_1365
N-6 DNA methylase.
 
 
 0.923
Rfer_0030
Restriction modification system DNA specificity domain.
 
  
 0.896
Rfer_4009
Conserved hypothetical protein.
  
    0.842
Rfer_1059
N-6 DNA methylase.
  
 
 0.709
Rfer_4008
Hypothetical protein.
       0.686
Rfer_1366
Putative type I site-specific restriction-modification system, S subunit.
 
  
 0.666
Rfer_1060
Restriction modification system DNA specificity domain.
  
  
 0.578
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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