Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_4036O-antigen polymerase. (516 aa)    
Predicted Functional Partners:
Rfer_0621
Conserved hypothetical protein.
  
     0.719
Rfer_3266
Conserved hypothetical protein.
  
     0.703
Rfer_2008
Conserved hypothetical protein.
  
     0.653
Rfer_3529
Transcriptional regulator, TetR family.
  
   
 0.651
Rfer_0113
Putative ATP synthase protein I.
  
     0.646
Rfer_0711
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.640
Rfer_4013
Conserved hypothetical protein.
  
     0.623
Rfer_2200
Conserved hypothetical transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.594
Rfer_2031
Twin-arginine translocation pathway signal.
  
     0.591
Rfer_3233
Conserved hypothetical protein.
  
     0.587
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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