STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4045Protein of unknown function DUF1289. (156 aa)    
Predicted Functional Partners:
Rfer_1400
Putative membrane protein.
  
     0.766
Rfer_0535
General secretion pathway protein H.
  
     0.678
Rfer_0541
Putative general secretory pathway N transmembrane protein.
  
     0.669
Rfer_0537
Methylation.
  
     0.665
Rfer_3320
Putative transmembrane protein.
  
     0.662
Rfer_1683
Putative transmembrane protein.
  
     0.626
Rfer_0538
General secretion pathway protein K.
  
     0.625
Rfer_3683
Metallophosphoesterase.
  
     0.608
Rfer_3699
GCN5-related N-acetyltransferase.
  
    0.575
Rfer_0536
General secretion pathway protein I.
  
     0.571
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.