Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rfer_4053FAD dependent oxidoreductase. (389 aa)    
Predicted Functional Partners:
Rfer_3727
Aspartate racemase.
   
 
  0.909
Rfer_1037
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
     
 0.903
Rfer_1546
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
     
 0.903
Rfer_0885
BFD-like (2Fe-2S)-binding protein.
 
 
 0.663
Rfer_2351
L-lactate dehydrogenase (cytochrome).
  
 
 0.499
Rfer_3691
Aminotransferase, class V.
  
 
 0.493
Rfer_4054
L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.481
Rfer_2278
Transcriptional regulator, MerR family.
 
  
 0.479
Rfer_2465
Thiamine biosynthesis protein ThiS.
 
  
 0.460
Rfer_3189
Alpha/beta hydrolase.
  
 
  0.458
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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