Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_4067AMP-dependent synthetase and ligase. (603 aa)    
Predicted Functional Partners:
Rfer_4065
Extracellular ligand-binding receptor.
 
    0.930
Rfer_4066
ABC transporter related.
 
    0.899
Rfer_3358
Triacylglycerol lipase.
  
 
 0.835
Rfer_0868
Carbamoyl-phosphate synthase L chain, ATP-binding.
    
 0.814
Rfer_4068
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.798
Rfer_4062
ABC transporter related.
 
    0.787
Rfer_4064
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.772
Rfer_3536
Putative phenylacetate-CoA ligase.
 
    0.741
Rfer_3284
AMP-dependent synthetase and ligase.
 
 
0.731
Rfer_0321
AMP-dependent synthetase and ligase.
 
 
0.705
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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