Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_4071Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (310 aa)    
Predicted Functional Partners:
Rfer_4011
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.580
Rfer_3491
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.563
Rfer_3620
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.525
Rfer_0341
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.491
Rfer_0844
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.483
Rfer_0457
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.476
Rfer_0474
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.474
Rfer_0374
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.466
Rfer_4070
acyl-CoA dehydrogenase-like.
  
    0.462
Rfer_2438
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.461
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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