Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4077Cytochrome c, class I. (109 aa)    
Predicted Functional Partners:
Rfer_2468
Cytochrome c, class I.
  
  
 
0.917
Rfer_4138
Cytochrome c, class I.
    
 0.907
Rfer_4085
Cytochrome c, class I.
  
  
 
0.905
Rfer_1438
Cytochrome c, class I.
  
  
 
0.904
Rfer_0762
Hypothetical protein.
     
  0.900
Rfer_2736
Cytochrome c, class I.
     
 
0.900
Rfer_2878
Rieske (2Fe-2S) protein.
  
     0.676
Rfer_2018
Phosphohistidine phosphatase, SixA.
  
     0.552
Rfer_3198
FMN-binding.
  
  
 0.550
Rfer_3199
Twin-arginine translocation pathway signal.
  
  
 0.533
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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