STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4079Hypothetical protein. (885 aa)    
Predicted Functional Partners:
Rfer_0878
Histidine kinase, HAMP protein.
  
   
 0.748
Rfer_0253
Conserved hypothetical protein.
 
 
 0.720
Rfer_4078
Conserved hypothetical protein.
 
     0.707
Rfer_0260
Conserved hypothetical protein.
 
 
 0.624
Rfer_4082
Conserved hypothetical protein.
 
 
 0.622
Rfer_2739
Hypothetical protein.
 
 
 0.606
Rfer_3633
Conserved hypothetical protein.
  
     0.532
Rfer_4076
Periplasmic nitrate reductase subunit NapC.
  
 
 0.524
Rfer_4075
NapC/NirT cytochrome c-like.
  
 
 0.506
Rfer_3669
Nucleic acid binding, OB-fold, tRNA/helicase-type.
 
   
 0.494
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.