STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4094Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
Rfer_4092
HybD peptidase. Aspartic peptidase. MEROPS family A31.
 
  
 0.955
Rfer_4088
Hydrogenase (NiFe) small subunit (hydA).
 
 
 0.945
Rfer_4091
Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.934
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.931
Rfer_4120
Uptake hydrogenase accessory protein HupU.
 
 
 0.878
Rfer_4096
Hydrogenase accessory protein HypB.
 
  
 0.872
Rfer_4099
Hydrogenase expression/formation protein HypD; Belongs to the HypD family.
 
  
 0.839
Rfer_4093
Hydrogenase assembly chaperone hypC/hupF.
  
  
 0.825
Rfer_4121
Hydrogen:quinone oxidoreductase.
 
  
 0.823
Rfer_4100
Hydrogenase expression/formation protein HypE.
 
   
 0.822
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.