Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4136Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (239 aa)    
Predicted Functional Partners:
Rfer_1737
Anti sigma-E protein, RseA, Burkholderiaceae specific.
  
 
 0.802
Rfer_4137
Conserved hypothetical protein.
 
    0.761
Rfer_2548
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.701
Rfer_4138
Cytochrome c, class I.
  
    0.700
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.578
rpoC
DNA-directed RNA polymerase, subunit beta-prime; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.571
Rfer_2549
Putative transmembrane transcriptional regulator; Anti-sigma factor.
  
 
 0.524
Rfer_4147
Putative transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.524
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.498
Rfer_1738
Putative sigma E regulatory protein, MucB/RseB.
 
 
 0.479
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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