STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4145Conserved hypothetical protein. (86 aa)    
Predicted Functional Partners:
Rfer_4144
Conserved hypothetical protein.
 
     0.816
Rfer_0137
Conserved hypothetical protein.
  
     0.635
Rfer_4151
NnrS.
 
     0.622
Rfer_1334
2-nitropropane dioxygenase, NPD.
 
     0.621
Rfer_1886
Putative nitric oxide reductase (subunit B) transmembrane protein.
 
     0.503
Rfer_4143
4Fe-4S ferredoxin, iron-sulfur binding; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.468
Rfer_2933
Glutamate synthase (NADH) large subunit.
   
    0.451
Rfer_3979
Phosphoesterase, PA-phosphatase related.
  
     0.444
Rfer_4146
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
       0.419
Rfer_4147
Putative transmembrane transcriptional regulator (anti-sigma factor).
       0.419
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.