Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4154Formiminoglutamate deiminase. (474 aa)    
Predicted Functional Partners:
Rfer_4155
N-formylglutamate amidohydrolase.
 
 
 0.996
Rfer_4156
Protein of unknown function DUF886.
 
    0.862
Rfer_4157
Transcriptional regulator, GntR family.
 
  
 0.827
cmk
3-phosphoshikimate 1-carboxyvinyltransferase / cytidylate kinase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily.
     
 0.572
Rfer_4158
ABC transporter related.
     
 0.547
Rfer_4159
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
       0.537
Rfer_4160
Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
       0.505
Rfer_3398
Periplasmic sensor hybrid histidine kinase.
  
  
 0.473
Rfer_4161
Transcriptional regulator, IclR family.
       0.461
Rfer_2463
Permease for cytosine/purines, uracil, thiamine, allantoin.
  
  
 0.431
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.