STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4154Formiminoglutamate deiminase. (474 aa)    
Predicted Functional Partners:
Rfer_4155
N-formylglutamate amidohydrolase.
 
 
 0.996
Rfer_4156
Protein of unknown function DUF886.
 
    0.852
Rfer_4157
Transcriptional regulator, GntR family.
 
  
 0.817
Rfer_4158
ABC transporter related.
     
 0.550
Rfer_4159
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
       0.538
Rfer_4160
Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
       0.506
Rfer_3398
Periplasmic sensor hybrid histidine kinase.
  
  
 0.485
Rfer_4161
Transcriptional regulator, IclR family.
       0.461
Rfer_1569
Prephenate dehydratase / chorismate mutase.
   
 
 0.458
Rfer_2463
Permease for cytosine/purines, uracil, thiamine, allantoin.
  
  
 0.440
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.