Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| Rfer_0350 | Rfer_2811 | L-glutamine synthetase. | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.941 |
| Rfer_0350 | Rfer_2933 | L-glutamine synthetase. | Glutamate synthase (NADH) large subunit. | 0.985 |
| Rfer_0350 | Rfer_4155 | L-glutamine synthetase. | N-formylglutamate amidohydrolase. | 0.830 |
| Rfer_2811 | Rfer_0350 | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | L-glutamine synthetase. | 0.941 |
| Rfer_2811 | Rfer_2933 | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Glutamate synthase (NADH) large subunit. | 0.947 |
| Rfer_2811 | Rfer_4155 | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | N-formylglutamate amidohydrolase. | 0.811 |
| Rfer_2933 | Rfer_0350 | Glutamate synthase (NADH) large subunit. | L-glutamine synthetase. | 0.985 |
| Rfer_2933 | Rfer_2811 | Glutamate synthase (NADH) large subunit. | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.947 |
| Rfer_2933 | Rfer_3261 | Glutamate synthase (NADH) large subunit. | Twin-arginine translocation pathway signal; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.706 |
| Rfer_2933 | Rfer_3269 | Glutamate synthase (NADH) large subunit. | Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.459 |
| Rfer_2933 | Rfer_3270 | Glutamate synthase (NADH) large subunit. | NADH dehydrogenase (quinone). | 0.577 |
| Rfer_2933 | Rfer_4155 | Glutamate synthase (NADH) large subunit. | N-formylglutamate amidohydrolase. | 0.813 |
| Rfer_3258 | Rfer_3260 | Formate dehydrogenase gamma subunit. | 4Fe-4S ferredoxin, iron-sulfur binding. | 0.998 |
| Rfer_3258 | Rfer_3261 | Formate dehydrogenase gamma subunit. | Twin-arginine translocation pathway signal; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.997 |
| Rfer_3258 | Rfer_3269 | Formate dehydrogenase gamma subunit. | Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.980 |
| Rfer_3258 | Rfer_3270 | Formate dehydrogenase gamma subunit. | NADH dehydrogenase (quinone). | 0.933 |
| Rfer_3258 | Rfer_4155 | Formate dehydrogenase gamma subunit. | N-formylglutamate amidohydrolase. | 0.900 |
| Rfer_3260 | Rfer_3258 | 4Fe-4S ferredoxin, iron-sulfur binding. | Formate dehydrogenase gamma subunit. | 0.998 |
| Rfer_3260 | Rfer_3261 | 4Fe-4S ferredoxin, iron-sulfur binding. | Twin-arginine translocation pathway signal; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.997 |
| Rfer_3260 | Rfer_3269 | 4Fe-4S ferredoxin, iron-sulfur binding. | Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.981 |
page 1 of 3