STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_4161Transcriptional regulator, IclR family. (247 aa)    
Predicted Functional Partners:
Rfer_0869
Conserved hypothetical protein.
  
    0.890
Rfer_4160
Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
     0.778
Rfer_0890
Transcriptional regulator, IclR family.
  
     0.724
Rfer_2347
Transcriptional regulator, IclR family.
  
     0.705
Rfer_4159
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
     0.688
Rfer_4157
Transcriptional regulator, GntR family.
  
    0.644
Rfer_4156
Protein of unknown function DUF886.
       0.643
Rfer_4158
ABC transporter related.
       0.643
Rfer_3897
Transcriptional regulator, TetR family.
  
   
 0.526
Rfer_2596
Transcriptional regulator, IclR family.
  
     0.505
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.