Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_4174Tripartite ATP-independent periplasmic transporter, DctQ component. (224 aa)    
Predicted Functional Partners:
Rfer_4175
TRAP dicarboxylate transporter- DctM subunit.
 
 
 0.959
Rfer_1483
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.851
Rfer_4184
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.847
Rfer_3481
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.843
Rfer_1484
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.833
Rfer_1481
TRAP dicarboxylate transporter- DctM subunit.
 
 
 0.826
Rfer_3483
TRAP dicarboxylate transporter- DctM subunit.
 
 
 0.807
Rfer_4196
TRAP dicarboxylate transporter- DctP subunit.
 
  
 0.598
Rfer_4194
TRAP dicarboxylate transporter- DctM subunit.
 
 
 0.538
Rfer_0448
TRAP dicarboxylate transporter- DctM subunit.
  
 
 0.478
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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