Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BTHE_0618 | BTHE_0974 | BTHE_0618 | BTHE_0974 | Hypothetical protein. | Transcriptional regulator. | 0.771 |
BTHE_0618 | rbpA | BTHE_0618 | BTHE_0971 | Hypothetical protein. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.774 |
BTHE_0618 | rpoZ | BTHE_0618 | BTHE_0163 | Hypothetical protein. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.745 |
BTHE_0968 | BTHE_0970 | BTHE_0968 | BTHE_0970 | WYL domain protein. | Helicase helY. | 0.764 |
BTHE_0968 | rbpA | BTHE_0968 | BTHE_0971 | WYL domain protein. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.841 |
BTHE_0968 | rpoA | BTHE_0968 | BTHE_0439 | WYL domain protein. | RpoA DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.517 |
BTHE_0968 | rpoB | BTHE_0968 | BTHE_0893 | WYL domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.517 |
BTHE_0968 | rpoC | BTHE_0968 | BTHE_0892 | WYL domain protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.516 |
BTHE_0968 | rpoZ | BTHE_0968 | BTHE_0163 | WYL domain protein. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.519 |
BTHE_0968 | sigA | BTHE_0968 | BTHE_0629 | WYL domain protein. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.519 |
BTHE_0970 | BTHE_0968 | BTHE_0970 | BTHE_0968 | Helicase helY. | WYL domain protein. | 0.764 |
BTHE_0970 | BTHE_0974 | BTHE_0970 | BTHE_0974 | Helicase helY. | Transcriptional regulator. | 0.540 |
BTHE_0970 | rbpA | BTHE_0970 | BTHE_0971 | Helicase helY. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.801 |
BTHE_0970 | rpoZ | BTHE_0970 | BTHE_0163 | Helicase helY. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.412 |
BTHE_0974 | BTHE_0618 | BTHE_0974 | BTHE_0618 | Transcriptional regulator. | Hypothetical protein. | 0.771 |
BTHE_0974 | BTHE_0970 | BTHE_0974 | BTHE_0970 | Transcriptional regulator. | Helicase helY. | 0.540 |
BTHE_0974 | rbpA | BTHE_0974 | BTHE_0971 | Transcriptional regulator. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.771 |
BTHE_0974 | rpoA | BTHE_0974 | BTHE_0439 | Transcriptional regulator. | RpoA DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.638 |
BTHE_0974 | rpoB | BTHE_0974 | BTHE_0893 | Transcriptional regulator. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.584 |
BTHE_0974 | rpoC | BTHE_0974 | BTHE_0892 | Transcriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.518 |
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