Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BTHE_0213 | BTHE_1483 | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | Phosphoglycerol transferase. | 0.419 |
BTHE_0849 | BTHE_1483 | Translation elongation factor. | Phosphoglycerol transferase. | 0.523 |
BTHE_0955 | BTHE_1483 | Protein translocase subunit YajC. | Phosphoglycerol transferase. | 0.457 |
BTHE_1480 | BTHE_1483 | dTDP-rhamnosyl transferase RfbF. | Phosphoglycerol transferase. | 0.590 |
BTHE_1483 | BTHE_0213 | Phosphoglycerol transferase. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.419 |
BTHE_1483 | BTHE_0849 | Phosphoglycerol transferase. | Translation elongation factor. | 0.523 |
BTHE_1483 | BTHE_0955 | Phosphoglycerol transferase. | Protein translocase subunit YajC. | 0.457 |
BTHE_1483 | BTHE_1480 | Phosphoglycerol transferase. | dTDP-rhamnosyl transferase RfbF. | 0.590 |
BTHE_1483 | BTHE_1484 | Phosphoglycerol transferase. | Hypothetical protein. | 0.417 |
BTHE_1484 | BTHE_1483 | Hypothetical protein. | Phosphoglycerol transferase. | 0.417 |