STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BTHE_1642Periplasmic binding protein-like domain. (140 aa)    
Predicted Functional Partners:
BTHE_1007
Glutamate synthase [NADPH] large chain.
   
 
 0.681
BTHE_1204
Transcriptional regulator, LacI family.
  
   
 0.660
BTHE_1432
LacI-type transcriptional regulator.
  
     0.655
BTHE_1340
LacI family transcriptional regulator.
  
     0.653
BTHE_0800
LacI family response repressor.
  
     0.638
BTHE_1215
Bacterial regulatory protein, LacI family.
  
     0.638
BTHE_0300
Transcriptional regulator, LacI family.
  
     0.633
BTHE_0262
Transcriptional regulator, LacI family.
  
     0.619
BTHE_1643
Alpha amylase, catalytic domain protein.
  
    0.580
BTHE_1644
Alpha-galactosidase.
  
    0.570
Your Current Organism:
Bifidobacterium thermophilum
NCBI taxonomy Id: 33905
Other names: AS 1.2235, ATCC 25525, B. thermophilum, BCRC 14669, Bifidobacterium ruminale, Bifidobacterium thermophilium, CCRC 14669, CCRC:14669, CCUG 34983, CIP 105420, DSM 20210, HAMBI 111, LMG 11573, LMG:11573
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.