STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BTHE_1968ABC transporter ATP-binding protein. (256 aa)    
Predicted Functional Partners:
BTHE_0558
ABC transporter.
 
  
 0.890
BTHE_0096
ABC superfamily ATP binding cassette transporter ABC protein.
  
     0.770
BTHE_0269
ATP-binding protein of ABC transporter system.
  
     0.767
BTHE_1140
Mn2+-Zn2+ transporter of ABC trasporter system, permease MntA.
 
     0.669
BTHE_0905
ABC transporter ATP-binding protein.
  
     0.636
BTHE_1763
Hypothetical protein.
  
     0.609
BTHE_1776
ABC transporter ATP-binding protein.
  
     0.593
BTHE_1672
Hypothetical protein.
  
     0.579
BTHE_0557
Hypothetical protein.
       0.537
BTHE_1764
Hypothetical protein.
  
     0.537
Your Current Organism:
Bifidobacterium thermophilum
NCBI taxonomy Id: 33905
Other names: AS 1.2235, ATCC 25525, B. thermophilum, BCRC 14669, Bifidobacterium ruminale, Bifidobacterium thermophilium, CCRC 14669, CCRC:14669, CCUG 34983, CIP 105420, DSM 20210, HAMBI 111, LMG 11573, LMG:11573
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