STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC18397.1Ribose 5-phosphate isomerase B. (168 aa)    
Predicted Functional Partners:
SMC18439.1
Ribulose-5-phosphate 3-epimerase.
  
 
 0.911
SMC19287.1
Ribose-phosphate pyrophosphokinase.
    
 0.906
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
     
 0.857
SMC18424.1
Phosphomannomutase.
     
 0.850
SMC18114.1
Ribulose-phosphate 3 epimerase family protein.
  
 
 0.834
SMC17869.1
Uracil phosphoribosyltransferase.
 
    0.791
SMC15785.1
Transketolase; Belongs to the transketolase family.
  
 
 0.757
SMC18105.1
Transketolase; Belongs to the transketolase family.
  
 
 0.757
SMC15832.1
Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
 
      0.715
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
 
 
  0.637
Your Current Organism:
Mycoplasma agassizii
NCBI taxonomy Id: 33922
Other names: ATCC 700616, CCUG 53180, M. agassizii, Mycoplasma agassizii Brown et al. 2001, strain PS6
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