STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC18634.1Ribose transport system ATP-binding protein. (501 aa)    
Predicted Functional Partners:
SMC18650.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.999
SMC18649.1
Ribose transport system substrate-binding protein.
 
 0.981
SMC18636.1
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.949
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.824
SMC17593.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.808
SMC16874.1
Transcriptional regulator, LacI family.
  
 
 0.565
SMC17606.1
ABC-type xylose transport system, substrate-binding protein.
  
 
 0.555
SMC18632.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
0.465
SMC17893.1
Simple sugar transport system ATP-binding protein.
  
 
 
0.455
SMC17883.1
Basic membrane lipoprotein Med, substrate-binding protein (PBP1-ABC) superfamily.
    
  0.435
Your Current Organism:
Mycoplasma agassizii
NCBI taxonomy Id: 33922
Other names: ATCC 700616, CCUG 53180, M. agassizii, Mycoplasma agassizii Brown et al. 2001, strain PS6
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