KOY83769.1 protein (Lysinibacillus macroides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Lysinibacillus macroides

NCBI taxonomy Id: 33935
Other names: ATCC 12905, Bacillus macroides, DSM 54, L. macroides, LMG 18474, LMG:18474, Lineola longa

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOY80319.1	KOY83768.1	ADM90_20975	ADM90_02395	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
KOY80319.1	KOY83769.1	ADM90_20975	ADM90_02400	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
KOY80319.1	rpoA	ADM90_20975	ADM90_23485	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.533
KOY80341.1	KOY80744.1	ADM90_21115	ADM90_16305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Erythromycin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
KOY80341.1	KOY82128.1	ADM90_21115	ADM90_10800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
KOY80341.1	KOY83769.1	ADM90_21115	ADM90_02400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
KOY80744.1	KOY80341.1	ADM90_16305	ADM90_21115	Erythromycin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
KOY80744.1	KOY83769.1	ADM90_16305	ADM90_02400	Erythromycin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
KOY80744.1	KOY83771.1	ADM90_16305	ADM90_02410	Erythromycin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
KOY82128.1	KOY80341.1	ADM90_10800	ADM90_21115	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
KOY82128.1	KOY83767.1	ADM90_10800	ADM90_02390	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferrichrome-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KOY82128.1	KOY83769.1	ADM90_10800	ADM90_02400	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KOY82128.1	KOY83771.1	ADM90_10800	ADM90_02410	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
KOY83763.1	KOY83768.1	ADM90_02370	ADM90_02395	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
KOY83763.1	KOY83769.1	ADM90_02370	ADM90_02400	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
KOY83763.1	rpoA	ADM90_02370	ADM90_23485	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.533
KOY83767.1	KOY82128.1	ADM90_02390	ADM90_10800	Ferrichrome-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KOY83767.1	KOY83768.1	ADM90_02390	ADM90_02395	Ferrichrome-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
KOY83767.1	KOY83769.1	ADM90_02390	ADM90_02400	Ferrichrome-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KOY83767.1	KOY83770.1	ADM90_02390	ADM90_02405	Ferrichrome-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferrichrome ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954