KOY82371.1 protein (Lysinibacillus macroides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Lysinibacillus macroides

NCBI taxonomy Id: 33935
Other names: ATCC 12905, Bacillus macroides, DSM 54, L. macroides, LMG 18474, LMG:18474, Lineola longa

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOY82370.1	KOY82371.1	ADM90_03225	ADM90_03230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KOY82370.1	KOY82646.1	ADM90_03225	ADM90_04740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
KOY82370.1	KOY82759.1	ADM90_03225	ADM90_05350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.504
KOY82371.1	KOY82370.1	ADM90_03230	ADM90_03225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KOY82371.1	KOY82550.1	ADM90_03230	ADM90_04215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.958
KOY82371.1	KOY82646.1	ADM90_03230	ADM90_04740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
KOY82371.1	KOY82759.1	ADM90_03230	ADM90_05350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.971
KOY82371.1	KOY83098.1	ADM90_03230	ADM90_07315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Menaquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
KOY82371.1	rplM	ADM90_03230	ADM90_23515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.912
KOY82371.1	rplQ	ADM90_03230	ADM90_23490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
KOY82371.1	rplT	ADM90_03230	ADM90_18750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.911
KOY82371.1	rplU	ADM90_03230	ADM90_18095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.931
KOY82371.1	rpmF	ADM90_03230	ADM90_04335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.	0.909
KOY82550.1	KOY82371.1	ADM90_04215	ADM90_03230	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
KOY82550.1	KOY83098.1	ADM90_04215	ADM90_07315	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Menaquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KOY82550.1	rplM	ADM90_04215	ADM90_23515	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.553
KOY82550.1	rplT	ADM90_04215	ADM90_18750	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.564
KOY82550.1	rplU	ADM90_04215	ADM90_18095	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.685
KOY82646.1	KOY82370.1	ADM90_04740	ADM90_03225	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
KOY82646.1	KOY82371.1	ADM90_04740	ADM90_03230	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944