Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
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[Homology]
Score
KOY82411.1Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)    
Predicted Functional Partners:
KOY84009.1
GABA permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.785
KOY80597.1
Ethanolamine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.785
KOY80853.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.785
KOY82410.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.708
KOY81211.1
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.707
KOY82413.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.692
KOY82259.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
  
 0.635
KOY80928.1
Cytochrome C551; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
KOY82553.1
Cytochrome B6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
KOY80638.1
PTS N-acetyl glucosamine transporter subunits IIABC; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.535
Your Current Organism:
Lysinibacillus macroides
NCBI taxonomy Id: 33935
Other names: ATCC 12905, Bacillus macroides, DSM 54, L. macroides, LMG 18474, LMG:18474, Lineola longa
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