Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KOY83628.1Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)    
Predicted Functional Partners:
KOY82414.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.734
KOY82413.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
KOY82884.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
KOY80998.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
KOY83926.1
ATP synthase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
KOY83712.1
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.454
KOY82412.1
DegV domain-containing protein YitS; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
KOY82871.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
KOY82241.1
Protein EcsB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
KOY83528.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0346 family.
  
     0.433
Your Current Organism:
Lysinibacillus macroides
NCBI taxonomy Id: 33935
Other names: ATCC 12905, Bacillus macroides, DSM 54, L. macroides, LMG 18474, LMG:18474, Lineola longa
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