STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOY82732.1Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)    
Predicted Functional Partners:
spoVFB
Dipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
KOY84058.1
CMP-N-acetylneuraminic acid synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.802
KOY82731.1
Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.799
KOY83641.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.758
KOY79918.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
KOY83211.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
KOY83934.1
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
gpr
Spore gernimation protein; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.685
KOY82433.1
CotZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.682
KOY80981.1
Stage II sporulation protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
Your Current Organism:
Lysinibacillus macroides
NCBI taxonomy Id: 33935
Other names: ATCC 12905, Bacillus macroides, DSM 54, L. macroides, LMG 18474, LMG:18474, Lineola longa
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