STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOY80478.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
KOY80267.1
RNA polymerase sigma factor, sigma-70 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.833
KOY82568.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
KOY82948.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
KOY80769.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
KOY81380.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
KOY79990.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
KOY80266.1
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.404
Your Current Organism:
Lysinibacillus macroides
NCBI taxonomy Id: 33935
Other names: ATCC 12905, Bacillus macroides, DSM 54, L. macroides, LMG 18474, LMG:18474, Lineola longa
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