Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aguF | kdgA | GTHT12_01358 | GTHT12_01353 | Protein LplB. | 2-dehydro-3-deoxy-phosphogluconate aldolase. | 0.586 |
aguF | kdgK_2 | GTHT12_01358 | GTHT12_01354 | Protein LplB. | 2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. | 0.605 |
aguF | uxuR | GTHT12_01358 | GTHT12_01352 | Protein LplB. | Putative HTH-type transcriptional regulator YdfH. | 0.458 |
aguF | xynB_2 | GTHT12_01358 | GTHT12_01355 | Protein LplB. | Beta-xylosidase. | 0.822 |
hom_2 | ilvH | GTHT12_02476 | GTHT12_02162 | Homoserine dehydrogenase. | Putative acetolactate synthase small subunit. | 0.677 |
hom_2 | uxuR | GTHT12_02476 | GTHT12_01352 | Homoserine dehydrogenase. | Putative HTH-type transcriptional regulator YdfH. | 0.450 |
ilvH | hom_2 | GTHT12_02162 | GTHT12_02476 | Putative acetolactate synthase small subunit. | Homoserine dehydrogenase. | 0.677 |
ilvH | uxuR | GTHT12_02162 | GTHT12_01352 | Putative acetolactate synthase small subunit. | Putative HTH-type transcriptional regulator YdfH. | 0.450 |
kdgA | aguF | GTHT12_01353 | GTHT12_01358 | 2-dehydro-3-deoxy-phosphogluconate aldolase. | Protein LplB. | 0.586 |
kdgA | kdgK_2 | GTHT12_01353 | GTHT12_01354 | 2-dehydro-3-deoxy-phosphogluconate aldolase. | 2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. | 0.997 |
kdgA | uxaC_1 | GTHT12_01353 | GTHT12_01351 | 2-dehydro-3-deoxy-phosphogluconate aldolase. | Uronate isomerase. | 0.822 |
kdgA | uxuA | GTHT12_01353 | GTHT12_01350 | 2-dehydro-3-deoxy-phosphogluconate aldolase. | Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. | 0.902 |
kdgA | uxuB | GTHT12_01353 | GTHT12_01349 | 2-dehydro-3-deoxy-phosphogluconate aldolase. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.414 |
kdgA | uxuR | GTHT12_01353 | GTHT12_01352 | 2-dehydro-3-deoxy-phosphogluconate aldolase. | Putative HTH-type transcriptional regulator YdfH. | 0.546 |
kdgA | xynB_2 | GTHT12_01353 | GTHT12_01355 | 2-dehydro-3-deoxy-phosphogluconate aldolase. | Beta-xylosidase. | 0.636 |
kdgK_2 | aguF | GTHT12_01354 | GTHT12_01358 | 2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. | Protein LplB. | 0.605 |
kdgK_2 | kdgA | GTHT12_01354 | GTHT12_01353 | 2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. | 2-dehydro-3-deoxy-phosphogluconate aldolase. | 0.997 |
kdgK_2 | uxaC_1 | GTHT12_01354 | GTHT12_01351 | 2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. | Uronate isomerase. | 0.807 |
kdgK_2 | uxuA | GTHT12_01354 | GTHT12_01350 | 2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. | Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. | 0.976 |
kdgK_2 | uxuB | GTHT12_01354 | GTHT12_01349 | 2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.538 |
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