STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacFD-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family. (354 aa)    
Predicted Functional Partners:
dacA_2
D-alanyl-D-alanine carboxypeptidase DacA; Belongs to the peptidase S11 family.
 
  
 
0.930
dacA_1
D-alanyl-D-alanine carboxypeptidase DacA; Belongs to the peptidase S11 family.
 
  
 
0.925
vanYB
D-alanyl-D-alanine carboxypeptidase.
     
 0.913
ARP43319.1
Hypothetical protein.
  
  
 0.913
yfeW
Serine hydrolase.
     
 0.912
ponA
Penicillin-binding protein 1A.
  
 
 0.910
pbpA
Penicillin-sensitive transpeptidase.
  
 
 0.910
ARP43320.1
Hypothetical protein.
  
  
 0.907
capA
Capsule biosynthesis protein CapA.
 
      0.898
dac_1
Diacetylchitobiose deacetylase.
      
 0.772
Your Current Organism:
Geobacillus thermodenitrificans
NCBI taxonomy Id: 33940
Other names: ATCC 29492, BGSC 94A1, Bacillus sp. BGSC W9A21, Bacillus sp. BGSC W9A45, Bacillus sp. BGSC W9A5, Bacillus sp. BGSC W9A54, Bacillus sp. BGSC W9A65, Bacillus sp. BGSC W9A66, Bacillus sp. BGSC W9A67, Bacillus sp. BGSC W9A69, Bacillus sp. BGSC W9A71, Bacillus sp. BGSC W9A73, Bacillus sp. BGSC W9A74, Bacillus sp. BGSC W9A86, Bacillus sp. BGSC W9A87, Bacillus sp. BGSC W9A91, Bacillus thermodenitrificans, DSM 465, G. thermodenitrificans, Geobacillus sp. A333, Geobacillus sp. F84a, Geobacillus sp. G11MC16, Geobacillus thermodenitrificans (Manachini et al. 2000) Nazina et al. 2001 emend. Cihan et al. 2011, Geobacillus thermodenitrificans (Manachini et al. 2000) Nazina et al. 2001 emend. Coorevits et al. 2012, LMG 17532, LMG:17532, strain R-35647
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